PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000282090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 282aa    MW: 30971.5 Da    PI: 8.2179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000282090genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035110132123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C++ F ++  L  H++ H
  MDP0000282090 110 FSCNYCHRKFYSSQALGGHQNAH 132
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-6107137No hitNo description
PROSITE profilePS5015711.406110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEPAKNYETN IFLVAEAPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKE KKPSIRIIDL  60
EASDSNSNRG FSFDNPELNL LECLETGSSE GTTTTTTTTL VSDAAEPRVF SCNYCHRKFY  120
SSQALGGHQN AHKRERTLAK RGQRMLGSHI MASAAGFGYP YYSSLASLPL HGGAFRALDI  180
XAHSTIHKPS SMMPSSAIRF GGSYGHRSFG SRSLFDQQPA VGKLAAAATR GVGGAGRFDM  240
AKSNMVSQSS EEIGKCWLGN DSRFKNSSDQ EKMKKLDLSL KL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347496.10.0PREDICTED: zinc finger protein 1-like
RefseqXP_008357277.10.0PREDICTED: zinc finger protein 1-like
TrEMBLD9ZIS41e-166D9ZIS4_MALDO; C2H2L domain class transcription factor
STRINGVIT_04s0008g05930.t012e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.15e-40zinc finger protein 3